IGS

Adress
Case 934
163 Avenue de Luminy 13009 Marseille
Structure(s)
Not documented
Unit:
CNRS UMR7256
Regional Center
IFB South
Scientific leader(s)
Technical leader(s)
Certificat(s)
  • Label IBiSA
  • CATI / CTAI
No website documented
Annual visits:
8 982 an
Unique visits:
13 790 an
Quotes:
Not documented
Latest update:
11-01-2014

GIantvirus.org fr

Description
Access conditions

Libre accès

No website documented
Annual visits:
800 an
Unique visits:
Not documented
Quotes:
58
Downloads:
Not documented

CaspR

Description

Phasique structure 3D

Access conditions

Gratuit

No website documented
Annual visits:
212 439 an
Unique visits:
109 588 an
Quotes:
458
Downloads:
54

Phylogeny.fr/ Blast-Explorer

Description
Access conditions

Gratuit

No website documented
Annual visits:
11 271 an
Unique visits:
Not documented
Quotes:
315
Downloads:
Not documented

Tcoffee

Description
Access conditions

Gratuit

No website documented
Annual visits:
2 087 989 an
Unique visits:
32 879 an
Quotes:
3
Downloads:
Not documented

Annotathon

Description
Access conditions

Gratuit

No website documented
Annual visits:
Not documented
Unique visits:
Not documented
Quotes:
258
Downloads:
Not documented

Programme d’analyse statistique de la signification de profiles d’expression

Description
Access conditions

Gratuit

Domains of activity
  • Biomedical
  • Biotechnology
  • Environment
Keywords:
  • No relevant terms in the list above

Formation professionnelle

No website documented
Trainees:
3 trainees / year
Training time:
Not documented
No upcoming session scheduled

Projet AMIDEX "spongex"

Description
Not documented
Access conditions

Accès en local aux différents clusters

Formation universitaire

No website documented
Trainees:
2 trainees / year
Training time:
Not documented
No upcoming session scheduled

Master STIC pour la Santé

Description
Not documented
Access conditions

Accès en local aux différents clusters

Users distribution
International
50 %
National
50 %
Regional
0 %
Local
0%
Explanation about this distribution:

Approximativement 50% internationaux.

Pas de traçabilité régionale/locale.

Platform's own projects

Nouvelle technologie de séquençage, long read • Oxford Nanopore Technologies Ltd • Oxford Science Park, Oxford, UK. OX4 4GA • Nouvelle techniques de prospections des bases de données à l'aide de l'information phylogénétique (Pplacer+)

Collaborations
National projets

Tara-Oceans, Permagenomics (France-Génomique), Spongex (IDEX-AMU).

International and European projects

Tara-Oceans, Oceanomics, MicroB3, BioMarks

Projects with industry

Oceanomics, MicroB3

Collaboration projects not founded through an external organism
Not documented
Provision of services not founded through an external organism
Not documented
Animations (Workshops, Work-groups, seminars, conferences ... )

EMBO Practical course: Bioinformatics and genomes analyses (Athène, 5-17 mai 2014).
(chaque année: 2012: Casablanca, 2013: La Réunion).

Internal publications
Mozar M. & Claverie J-M. (2014) Enlarging the Mimiviridae family using asparagine synthase as a sequence bait. Virology, 2014 Oct;466-467:112-22.
External publications
Berney C, Romac S, Mahé F, Santini S, Siano R, Bass D(2013) Vampires in the oceans: predatory cercozoan amoebae in marine habitats. ISME J.7:2387-99, PMID:23864128

Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G, Dacks JB, Delwiche CF, Dyhrman ST, Glockner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV, Allen AE, Bidle K, Borodovsky M, Bowler C, Brownlee C, Cock JM, Elias M, Gladyshev VN, Groth M, Guda C, Hadaegh A, Iglesias-Rodriguez MD, Jenkins J, Jones BM, Lawson T, Leese F, Lindquist E, Lobanov A, Lomsadze A, Malik SB, Marsh ME, Mackinder L, Mock T, Mueller-Roeber B, Pagarete A, Parker M, Probert I, Quesneville H, Raines C, Rensing SA, Riano-Pachon DM, Richier S, Rokitta S, Shiraiwa Y, Soanes DM, van der Giezen M, Wahlund TM, Williams B, Wilson W, Wolfe G, Wurch LL(2013) Pan genome of the phytoplankton Emiliania underpins its global distribution.Nature.499 ;7457:209-13, PMID:23760476

Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H(2013) Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes.ISME J. ; :,2013 Apr 11 - PMID:23575371

Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, Ogata H, Probert I, Edvardsen B, de Vargas C(2013) Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.Mol Ecol. ; :,2013 Jan 22 - PMID:23163508

Jeanniard A, Dunigan DD, Gurnon JR, Agarkova IV, Kang M, Vitek J, Duncan G, McClung OW, Larsen M, Claverie JM, Van Etten JL, Blanc G(2013) Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses.BMC Genomics.14 ;1:158,2013 Mar 8 - PMID:23497343
Publications with the hosting laboratory
Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Couté Y, Rivkina E, Abergel C, Claverie JM. Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4274-9. PMID:24591590

Philippe N, Legendre M, Doutre G, Couté Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C(2013) Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes.Science.341 ;6143:281-6,2013 Jul 19 - PMID:23869018

Santini S, Jeudy S, Bartoli J, Poirot O, Lescot M, Abergel C, Barbe V, Wommack KE, Noordeloos AA, Brussaard CP, Claverie JM(2013) Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. Proc Natl Acad Sci U S A.110 ;26:10800-5,2013 Jun 25 - PMID:23754393
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