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freely accessible at http://macsydb.web.pasteur.fr/

Description: 

Protein secretion systems are key virulence factors of all major bacterial pathogens with an LPS-containing outer membrane. They are also involved in complex antagonistic ecological interactions between bacteria. We designed models and protein profiles to detect an unprecedented number and diversity (∼10000) of bacterial protein secretion systems (T1SS, T2SS, T3SS, T4SS, T5SS, T6SSi-iii, T9SS) and evolutionarily related appendages (T4P, Tad, Flagellum) in 1528 genomes of diderm bacteria.

ref:

Abby, Sophie S., Jean Cury, Julien Guglielmini, Bertrand Néron, Marie Touchon, and Eduardo PC Rocha.

"Identification of protein secretion systems in bacterial genomes." Scientific reports 6 (2016).

Date de dernière mise à jour: 
Vendredi, janvier 29, 2016
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