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Description: 

Online resource for a comprehensive phylogenetic oligonucleotide probe database. PhylOPDb provides a convivial and easy-to-use web interface to browse both regular and explorative 16S rRNA-targeted probes.

Two high-throughput probe design software, PhylGrid (Jaziri et al., 2011; Jaziri et al., 2014) and KASpOD (Parisot et al., 2012), we used to select both regular and explorative 16S rRNA gene-targeted oligonucleotide probes. Such probe set or subset could be use to globally monitor known and unknown prokaryotic communities through various techniques including DNA microarrays, Polymerase Chain Reaction (PCR), Fluorescent In Situ Hybridisation (FISH), targeted gene capture or in silico rapid sequence identification.

 

Publications :
    Jaziri, F., Parisot, N., Abid, A., Denonfoux, J., Ribière, C., Gasc, C., Boucher, D., Brugère, J.-F., Mahul, A., Hill, D.R.C., Peyretaillade, E. and Peyret, P. (2013) PhylODb: a 16S rRNA oligonucleotide probe database for prokaryotic identification, Oxford Database.

Date de dernière mise à jour: 
Jeudi, janvier 30, 2014
Citations: 
3
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