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Description: 

Software dedicated for the microbial ecology and environmental studies. The software use individual nucleic sequences or consensus sequences produced by multiple alignments to design degenerate probes in order to target gene families covering many exhaustive formatted database dedicated to microbial ecology containing about 10 million coding sequences (CDS) and their putative 5’ and 3’ untranslated regions (UTR). Potential cross-hybridizations identified by the program are clustered and results are organized in order to simplifyuser interpretation.

Publication : Dugat-Bony, E., M. Missaoui, E. Peyretaillade, C. Biderre-Petit, O. Bouzid, C. Gouinaud, D. Hill, and P. Peyret (2011) HiSpOD: probe design for functional DNA microarrays. Bioinformatics (Oxford, England) 27:641-648.

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Citations: 
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cea
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