The RDF Knowledge-based Database for plant molecular networks.
Extraction de connaissances Fouille de texte Ontologies Web sémantique Intégration de données hétérogènes Représentation des connaissances
GPL-3.0 Mature
ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: i) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; ii) A multispecies genomic browser; iii) a Genomicus gene synteny browser.
Mature
Tool designed to gather the functional annotation of genes from several institutional databases for a specific chromosomal region.
An aphid genome database.
Analyse de données de séquençage NGS Génomique comparative Annotation de séquences
Protéomique Curation de collections de données
MIT Mature
A software for automated NOE assignment and NMR structure calculation.
GPL-3.0 Mature
A unified workspace built around a Python package PADMet (Python library for hAndling metaData of METabolism), to house the reconstruction of genome-scale metabolic models.
Bases de données et systèmes d’informations Comparaison des génomes Annotation de séquences Recherche de motifs
Prédictions des propriétés structurales Bioinformatique structurale Analyse de séquences Prédiction d'homologie/orthologie Annotation de séquences
Curation de collections de données
GPL-2.0 Mature
A Next-Generation Information System for Musa genomics
Bases de données et systèmes d’informations Comparaison des génomes Génomique (DNA-seq) Analyse de séquences Intégration d'outils Interfaces, portails web
Other Emerging
BIII Bio Image informatics Index (www.biii.eu) also called BISE is a knowledge database of software tools, image databases for benchmarking and training materials for bio image analysis. Software tools are organized as full protocol of analysis (workflow), specific brick (component) to construct a workflow, or software platform or library (collection). They are described using Edam Bio Imaging, which is iteratively defined using this website. All entries are exposed following FAIR principles and accessible for other usage with (ODC-By) v1.0 license.
Bases de données et systèmes d’informations Environnements de calcul Données Cluster Parallélisation Développements technologiques de l‘Information et de la Communication Outils Intégration d'outils Interfaces, portails web Intégration de données Gestion et transfert de données
Bacterial protein tYrosine Kinase database (BYKdb). Bacterial tyrosine-kinases share no resemblance with their eukaryotic counterparts and they have been unified in a new protein family named BY-kinases. However, BY-kinase sequence annotations in primary databases remain incomplete. This prompted us to develop a specialized database of computer-annotated BY-kinase sequences.
Bases de données et systèmes d’informations Données Cluster Parallélisation Développements technologiques de l‘Information et de la Communication Intégration de données Gestion et transfert de données
Freeware Legacy
The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental table.
GPL-2.0 Mature
The Cocoa Genome Hub is an integrated web-based database providing centralized access to the cocoa reference genome sequences and genomic resources.
GPL-2.0 Mature
The Coffee Genome Hub is an integrated web-based database providing centralized access to coffee community genomics, genetics and breeding data and analysis tools to facilitate basic, translational and applied research in coffee.
Bases de données et systèmes d’informations Génomique (DNA-seq)
Analyse de séquences Annotation de séquences
Mature
A CRISPR Interactive database.
Suite of web applications for analysing Clustered Regularly Interspaced Short Palindromic Repeats.
