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Nombre de résultats : 122
AgroLD
http://agrold.southgreen.fr/agrold/

The RDF Knowledge-based Database for plant molecular networks.

Extraction de connaissances Fouille de texte Ontologies Web sémantique Intégration de données hétérogènes Représentation des connaissances

ANISEED
https://www.aniseed.cnrs.fr

GPL-3.0 Mature

ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: i) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; ii) A multispecies genomic browser; iii) a Genomicus gene synteny browser.

AnnotQTL
http://annotqtl.genouest.org/

Mature

Tool designed to gather the functional annotation of genes from several institutional databases for a specific chromosomal region.

AphidBase
http://aphidbase.com/

An aphid genome database.

Analyse de données de séquençage NGS Génomique comparative Annotation de séquences

Arabidopsis chloroplast database (AT_CHLORO)

Protéomique Curation de collections de données

ARIA
http://aria.pasteur.fr/

MIT Mature

A software for automated NOE assignment and NMR structure calculation.

AuReMe
http://aureme.genouest.org

GPL-3.0 Mature

A unified workspace built around a Python package PADMet (Python library for hAndling metaData of METabolism), to house the reconstruction of genome-scale metabolic models.

Bacterial Genotyping

Bases de données et systèmes d’informations Comparaison des génomes Annotation de séquences Recherche de motifs

BactPepDB

Prédictions des propriétés structurales Bioinformatique structurale Analyse de séquences Prédiction d'homologie/orthologie Annotation de séquences

BAliBASE

Curation de collections de données

Banana Genome Hub
https://banana-genome-hub.southgreen.fr/

GPL-2.0 Mature

A Next-Generation Information System for Musa genomics

Bases de données et systèmes d’informations Comparaison des génomes Génomique (DNA-seq) Analyse de séquences Intégration d'outils Interfaces, portails web

BISE Bioimage Informatics Search Engine
https://biii.eu

Other Emerging

BIII Bio Image informatics Index (www.biii.eu) also called BISE is a knowledge database of software tools, image databases for benchmarking and training materials for bio image analysis. Software tools are organized as full protocol of analysis (workflow), specific brick (component) to construct a workflow, or software platform or library (collection). They are described using Edam Bio Imaging, which is iteratively defined using this website. All entries are exposed following FAIR principles and accessible for other usage with (ODC-By) v1.0 license.

BLC2db

Bases de données et systèmes d’informations Environnements de calcul Données Cluster Parallélisation Développements technologiques de l‘Information et de la Communication Outils Intégration d'outils Interfaces, portails web Intégration de données Gestion et transfert de données

BYKdb
http://bykdb.ibcp.fr/BYKdb/

Bacterial protein tYrosine Kinase database (BYKdb). Bacterial tyrosine-kinases share no resemblance with their eukaryotic counterparts and they have been unified in a new protein family named BY-kinases. However, BY-kinase sequence annotations in primary databases remain incomplete. This prompted us to develop a specialized database of computer-annotated BY-kinase sequences.

Bases de données et systèmes d’informations Données Cluster Parallélisation Développements technologiques de l‘Information et de la Communication Intégration de données Gestion et transfert de données

Ciona robusta Anatomy and Development Ontology
https://www.aniseed.cnrs.fr/aniseed/anatomy/find_devstage

Freeware Legacy

The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental table.

Cocoa Genome Hub
https://cocoa-genome-hub.southgreen.fr/

GPL-2.0 Mature

The Cocoa Genome Hub is an integrated web-based database providing centralized access to the cocoa reference genome sequences and genomic resources.

Coffee Genome Hub
https://coffee-genome-hub.southgreen.fr/

GPL-2.0 Mature

The Coffee Genome Hub is an integrated web-based database providing centralized access to coffee community genomics, genetics and breeding data and analysis tools to facilitate basic, translational and applied research in coffee.

Bases de données et systèmes d’informations Génomique (DNA-seq)

Conjdb

Analyse de séquences Annotation de séquences

Crispi
http://crispi.genouest.org/

Mature

A CRISPR Interactive database.

CRISPRCas
https://crisprcas.i2bc.paris-saclay.fr/

Suite of web applications for analysing Clustered Regularly Interspaced Short Palindromic Repeats.

IFB - Institut Français de Bioinformatique ♦ CNRS UMS 3601 ♦ IFB-Core, Génoscope - 2 rue Gaston Crémieux, 91057 - ÉVRY – CEDEX ANR-11-INBS-0013236
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